BtaEX6078825 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016456 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr21:69313272-69317273:-
Coord C1 exon
chr21:69317174-69317273
Coord A exon
chr21:69315156-69315356
Coord C2 exon
chr21:69313272-69313520
Length
201 bp
Sequences
Splice sites
3' ss Seq
TGCCCGCCCTCTCCCCTAAGGTG
3' ss Score
10.79
5' ss Seq
GAAGTAAGC
5' ss Score
6.95
Exon sequences
Seq C1 exon
TAACAGAGACATTAAACCTGACAATGTCCTTCTGGATGTAAATGGTCATATCCGCCTGGCCGACTTTGGATCCTGTTTGAAGATGAATGACGATGGAACT
Seq A exon
GTGCAGTCCTCCGTGGCCGTGGGCACCCCGGACTACATCTCCCCAGAGATCCTGCAGGCGATGGAGGACGGCATGGGCAAGTACGGCCCCGAGTGCGACTGGTGGTCTCTGGGCGTCTGCATGTACGAGATGCTGTATGGAGAGACCCCGTTCTACGCCGAGTCCCTCGTGGAGACCTATGGGAAGATCATGAACCATGAA
Seq C2 exon
GAGCGGTTTCAGTTCCCGTCCCACGTCACAGACGTGTCCGAGGAGGCCAGAGACCTCATCCAGAGGCTGATCTGCAGCCGGGAGCGCCGGCTGGGGCAGAACGGGGTGGAGGACTTCAAGAAGCATGCCTTCTTCCAAGGGCTGAACTGGGAGAACATCCGGAACCTGGAGGCGCCCTACATCCCGGATGTGAGCAGTCCTTCCGACACGTCCAACTTCGACGTGGACGACGACGTGCTTCGGAACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016456-'6-9,'6-6,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.280
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.3=100)
A:
PF0006920=Pkinase=FE(24.5=100)
C2:
PF0006920=Pkinase=PD(16.4=53.0),PF0043319=Pkinase_C=PU(41.7=24.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCGACTTTGGATCCTGTTT
R:
GATGTTCCGAAGCACGTCGTC
Band lengths:
292-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]