DreEX6044362 @ danRer10
Exon Skipping
Gene
ENSDARG00000019383 | cdc42bpb
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:ZFIN;Acc:ZDB-GENE-030131-3647]
Coordinates
chr20:18557196-18566387:-
Coord C1 exon
chr20:18566294-18566387
Coord A exon
chr20:18560336-18560536
Coord C2 exon
chr20:18557196-18557444
Length
201 bp
Sequences
Splice sites
3' ss Seq
GTCACTTATCCTCTGTGCAGGTC
3' ss Score
9.58
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
Exon sequences
Seq C1 exon
GGATATAAAACCCGACAACGTGCTGCTGGACATGAACGGCCACATCCGACTCGCTGACTTCGGCTCCTGTCTGAAGATGATGCAAGACGGCACG
Seq A exon
GTCCAATCTTCAGTGGCTGTGGGCACACCAGACTACATCTCTCCAGAGATCCTGCAGGCCATGGAGGACGGCATGGGGAAATACGGGCCGGAGTGTGACTGGTGGTCGCTGGGCGTTTGCATGTATGAGATGCTGTACGGCGAGACACCCTTTTACGCCGAATCCCTGGTGGAGACCTATGGAAAGATCATGAACCATGAG
Seq C2 exon
GAGCGTTTCCAGTTCCCTTCCCACATCACGGATGTATCCGAGGATGCTAAAGACCTGATCCAGAGGCTGATTTGCAGCCGAGAGCGCCGTTTGGGTCAACATGGCATCGAGGAGTTCAGGAAGCACGCCTTTTTCTCCGGCATCGACTGGGAGAACATCCGGAACATGGAGGCGCCATACATCCCTGACGTCAGCTCTCCATCAGACACCTCCAACTTTGATGTAGATGATGACGTACTGAAGAATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019383-'9-11,'9-9,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.241
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(11.6=100)
A:
PF0006920=Pkinase=FE(24.7=100)
C2:
PF0006920=Pkinase=PD(16.5=53.0),PF0043319=Pkinase_C=PU(41.7=24.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGTGCTGCTGGACATGAA
R:
GGAGGTGTCTGATGGAGAGCT
Band lengths:
292-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]