GgaEX6039100 @ galGal3
Exon Skipping
Gene
ENSGALG00000011432 | CDC42BPB
Description
NA
Coordinates
chr5:52453728-52456771:-
Coord C1 exon
chr5:52456678-52456771
Coord A exon
chr5:52455582-52455782
Coord C2 exon
chr5:52453728-52453976
Length
201 bp
Sequences
Splice sites
3' ss Seq
ATGTTTGCCTTATTTTTAAGGTG
3' ss Score
10.71
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
GGACATAAAGCCTGATAATGTTCTTTTGGACATGAATGGCCATATACGACTGGCAGATTTTGGGTCCTGTCTGAAAATGAGTGAAGATGGCACA
Seq A exon
GTGCAGTCCTCTGTAGCAGTGGGTACGCCAGACTACATCTCCCCTGAGATACTGCAAGCCATGGAGGATGGAATGGGAAAATACGGGCCTGAATGTGACTGGTGGTCACTGGGGGTCTGCATGTATGAAATGCTTTATGGTGAAACACCTTTTTATGCAGAGTCATTAGTGGAAACCTATGGGAAAATTATGAATCACGAA
Seq C2 exon
GAACGATTCCAGTTTCCATCCCATGTTACAGATGTGTCTGAAGAAGCAAAAGATCTTATTCAGCGACTTATCTGCAGTAGGGAACGTAGGCTGGGACAGAATGGAATAGAGGATTTTAAGTCTCATGCATTTTTTGAAGGACTTAACTGGGATAACATCCGAAACCTAGAAGCACCTTACATTCCAGATGTTAGCAGTCCATCTGACACCTCAAACTTCGATGTAGATGATGATGTATTAAGAAATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432-'5-9,'5-8,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.241
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(11.6=100)
A:
PF0006920=Pkinase=FE(24.7=100)
C2:
PF0006920=Pkinase=PD(16.5=53.0),PF0043319=Pkinase_C=PU(41.7=24.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGGCCATATACGACTGGC
R:
TCATCTACATCGAAGTTTGAGGTGT
Band lengths:
292-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]