RnoEX0018990 @ rn6
Exon Skipping
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135778833-135780476:-
Coord C1 exon
chr6:135780383-135780476
Coord A exon
chr6:135779910-135780110
Coord C2 exon
chr6:135778833-135779081
Length
201 bp
Sequences
Splice sites
3' ss Seq
TCACCCCTTCTCCCTCCAAGGTT
3' ss Score
8.02
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
AGACATTAAACCCGACAACGTCCTTCTGGATGTCAACGGTCACATCCGCCTGGCTGACTTTGGCTCGTGCTTGAAGATGAACGATGACGGCACT
Seq A exon
GTTCAGTCTTCCGTGGCTGTGGGCACACCTGACTACATCTCACCAGAGATCCTGCAGGCCATGGAGGATGGCATGGGCAAATACGGGCCCGAGTGTGACTGGTGGTCCCTGGGCGTCTGCATGTATGAGATGCTGTATGGAGAAACGCCATTTTATGCAGAGTCTCTGGTGGAGACATATGGAAAGATCATGAACCACGAG
Seq C2 exon
GAGCGGTTTCAGTTCCCATCCCACGTCACTGACGTCTCTGAAGAAGCGAAAGACCTCATCCAGAGACTAATATGCAGCAGAGAGCGCCGGCTCGGGCAGAACGGGATAGAGGACTTTAAGAAACATGCATTCTTTGAAGGTCTAAATTGGGAAAATATACGGAACCTGGAAGCACCCTACATTCCCGATGTGAGCAGCCCTTCTGACACGTCCAACTTCGATGTGGACGATGACGTGCTGAGAAACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675-'17-14,'17-12,19-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.063
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(11.6=100)
A:
PF0006920=Pkinase=FE(24.7=100)
C2:
PF0006920=Pkinase=PD(16.5=53.0),PF0043319=Pkinase_C=PU(41.7=24.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCTTCTGGATGTCAACGG
R:
CCACATCGAAGTTGGACGTGT
Band lengths:
302-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]