BtaEX6079070 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047606 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:HGNC:7410]
Coordinates
chr21:71371679-71373312:+
Coord C1 exon
chr21:71371679-71371690
Coord A exon
chr21:71372865-71372896
Coord C2 exon
chr21:71373161-71373312
Length
32 bp
Sequences
Splice sites
3' ss Seq
GTCCTCCTTCCTCCTGTCAGGTT
3' ss Score
10.99
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GCACCTACCTGG
Seq A exon
GTTTGGCGAACCACGGACAGACCAGGCACATG
Seq C2 exon
GGACCAAGCCGGAACCTCCTGCTCAACGGGAAGGCGTACCCCACCAAGGTGCGCCTCATCCGGGGGGGCTCGCTGCCCCCCGTCAAGCGGCGGCGGATGAACTGGATCGACGCCCCCGACGACGTGTTCTACATGGCCACTGAGGAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047606-'21-32,'21-30,23-32=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=0.657
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]