MmuEX0029875 @ mm10
Exon Skipping
Gene
ENSMUSG00000021144 | Mta1
Description
metastasis associated 1 [Source:MGI Symbol;Acc:MGI:2150037]
Coordinates
chr12:113133541-113136432:+
Coord C1 exon
chr12:113133541-113133576
Coord A exon
chr12:113135797-113135828
Coord C2 exon
chr12:113136281-113136432
Length
32 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTTCTCTTTCATCAGGTC
3' ss Score
11.03
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GCAACATGAAGAAGCGCCTCTTGATGCCCAGTAGGG
Seq A exon
GTCTGGCAAACCATGGACAGACCAGGCACATG
Seq C2 exon
GGACCAAGTCGGAATCTCCTGCTCAATGGGAAGTCCTACCCCACCAAAGTGCGCCTAATCCGTGGTGGCTCCCTGCCTCCAGTCAAGCGGCGGCGAATGAACTGGATCGACGCCCCAGATGATGTATTTTACATGGCCACCGAAGAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021144-'34-39,'34-38,41-39
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=0.614
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAAGCGCCTCTTGATGC
R:
CTTGACTGGAGGCAGGGAGC
Band lengths:
117-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types