HsaEX6073260 @ hg19
Exon Skipping
Gene
ENSG00000182979 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:7410]
Coordinates
chr14:105933044-105936329:+
Coord C1 exon
chr14:105933044-105933079
Coord A exon
chr14:105935804-105935835
Coord C2 exon
chr14:105936178-105936329
Length
32 bp
Sequences
Splice sites
3' ss Seq
TCTCCTCCATTTCTCATCAGGTC
3' ss Score
10.32
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GCAACATGAAGAAGCGCCTCTTGATGCCCAGTAGGG
Seq A exon
GTCTGGCAAACCACGGACAGGCCAGGCACATG
Seq C2 exon
GGACCAAGCCGGAACCTCCTGCTCAACGGGAAGTCCTACCCCACCAAAGTGCGCCTGATCCGGGGGGGCTCCCTGCCCCCAGTCAAGCGGCGGCGGATGAACTGGATCGACGCCCCGGATGACGTGTTCTACATGGCCACAGAGGAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182979-'29-35,'29-34,34-35=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=0.987 C2=0.798
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAAGCGCCTCTTGATGC
R:
CTTGACTGGGGGCAGGGAG
Band lengths:
117-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)