GgaEX0003599 @ galGal4
Exon Skipping
Gene
ENSGALG00000002803 | MTA1
Description
metastasis-associated protein MTA1 [Source:RefSeq peptide;Acc:NP_001012971]
Coordinates
chr8:4000715-4015213:-
Coord C1 exon
chr8:4015061-4015213
Coord A exon
chr8:4003719-4003750
Coord C2 exon
chr8:4000715-4000866
Length
32 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTCCTGTTTGTTAGGTC
3' ss Score
10.4
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
AATCTCATCCGTGTCCTCCGAAACCAGACCCTGCAAAGAGCTTATCCAGTTCTCTCAACAATCTGACTCCTGCTAAGTTTACACCTGTCATTAATAATGGATCCCCAACTATACTGGGAAAAAGAAGTTATGAACAACACAATGGAATGGATG
Seq A exon
GTCTGCCTAACCACGGACAAACCAGACAAATG
Seq C2 exon
GGACCAAGCCGAAACTTGCTGCTCAATGGGAAATCATACCCAACAAAAGTCCGATTAATTCGTGGTGGATCCATGCCTCCAGTGAAAAGGAGGAGGATGAACTGGATTGATGCACCAGATGATGTTTTCTACATGGCCACTGAAGAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002803_MULTIEX1-15/16=13-16
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAACAATCTGACTCCTGCT
R:
ATTGAGCAGCAAGTTTCGGCT
Band lengths:
128-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]