GgaEX1037268 @ galGal4
Exon Skipping
Gene
ENSGALG00000002803 | MTA1
Description
metastasis-associated protein MTA1 [Source:RefSeq peptide;Acc:NP_001012971]
Coordinates
chr8:4003719-4013879:-
Coord C1 exon
chr8:4013844-4013879
Coord A exon
chr8:4008096-4008107
Coord C2 exon
chr8:4003719-4003750
Length
12 bp
Sequences
Splice sites
3' ss Seq
3' ss Score
5' ss Seq
5' ss Score
Exon sequences
Seq C1 exon
GCAACATGAAGAAGCGCCTGTTGATGCCTAGCAGGG
Seq A exon
GAACTTACTTAG
Seq C2 exon
GTCTGCCTAACCACGGACAAACCAGACAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002803-MICROEX1-4/5
Average complexity
MIC-M
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]