GgaEX1037274 @ galGal4
Exon Skipping
Gene
ENSGALG00000002803 | MTA1
Description
metastasis-associated protein MTA1 [Source:RefSeq peptide;Acc:NP_001012971]
Coordinates
chr8:4003719-4015213:-
Coord C1 exon
chr8:4015061-4015213
Coord A exon
chr8:4013844-4013879
Coord C2 exon
chr8:4003719-4003750
Length
36 bp
Sequences
Splice sites
3' ss Seq
GTTCACTTGTGCTCTATCAGGCA
3' ss Score
6.32
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
AATCTCATCCGTGTCCTCCGAAACCAGACCCTGCAAAGAGCTTATCCAGTTCTCTCAACAATCTGACTCCTGCTAAGTTTACACCTGTCATTAATAATGGATCCCCAACTATACTGGGAAAAAGAAGTTATGAACAACACAATGGAATGGATG
Seq A exon
GCAACATGAAGAAGCGCCTGTTGATGCCTAGCAGGG
Seq C2 exon
GTCTGCCTAACCACGGACAAACCAGACAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002803_MULTIEX1-14/16=13-15
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAACAATCTGACTCCTGCT
R:
TTTGTCCGTGGTTAGGCAGAC
Band lengths:
122-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]