HsaEX0040388 @ hg19
Exon Skipping
Gene
ENSG00000182979 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:7410]
Coordinates
chr14:105932763-105935835:+
Coord C1 exon
chr14:105932763-105932915
Coord A exon
chr14:105933044-105933079
Coord C2 exon
chr14:105935804-105935835
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCCCACCCCGGCGCTGCCAGGCA
3' ss Score
3.79
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
AGACCCACCCCCGCCCCCCCAAGCCTGACCCCGTGAAAAGCGTGTCCAGCGTGCTCAGCAGCCTGACGCCCGCCAAGGTGGCCCCCGTCATCAACAACGGCTCCCCCACCATCCTGGGCAAGCGCAGCTACGAGCAGCACAACGGGGTGGACG
Seq A exon
GCAACATGAAGAAGCGCCTCTTGATGCCCAGTAGGG
Seq C2 exon
GTCTGGCAAACCACGGACAGGCCAGGCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182979_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=0.987
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCAGCAGCCTGACG
R:
CTGGCCTGTCCGTGGTTTG
Band lengths:
128-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)