HsaINT0105831 @ hg19
Intron Retention
Gene
ENSG00000182979 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:7410]
Coordinates
chr14:105933044-105935835:+
Coord C1 exon
chr14:105933044-105933079
Coord A exon
chr14:105933080-105935803
Coord C2 exon
chr14:105935804-105935835
Length
2724 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
TCTCCTCCATTTCTCATCAGGTC
3' ss Score
10.32
Exon sequences
Seq C1 exon
GCAACATGAAGAAGCGCCTCTTGATGCCCAGTAGGG
Seq A exon
GTAAGGCCTGGAGCCGCGGGCGGGCGCTGCGCCGGCCCCGCCCGTGATGCCTGTGCTGTGCTGCTCTGTGTCCCCGCGGCGGGCGGCCCAGGGCCCATGCTTGGGGCAGTCCACGTGAGCCAGGCCACAGCCCAGTTCCCCACATTCCTCCCGACATCACTGGTCCCTTGGTGAAGACCCCCCGAGCCCAGGCATCTGGCCCTCGGCCCCCTGGCCCCGCCTCCTGTCAGTGGACTGTCCTGGCACGTGTGGCCCTGGCGCCCCTGCCTGCGCTGTCTGCCATCGCGCTGTGACTGCCCGCATGCTGCCAGCCTCAGCTCGTGGGGCCGCCCGTGCTGTGCCTGCAATCCTTCCGTGCGCCTGCCAGGCGGGACAGTGGGGAGGGTGGTCGGGGGTGTCTGTGTGGGCCGTGGGCAACTGAGCTTGTACACATGGGTGCCTTCTGTCGGAGGACTGGCTCAGGTGCTCTGTGCCGGTTGCTTGGAGCAGGGGCTGCGGGACCCCAGGCCCCTTGGGGAAGAGCAGATAGGACCAAGCCTAGCATGAGGAGGCCAGGTGTGTGGGGCCCGGGTGTGCAAGTGCTGGGCCTGCCAGTGTGGATGTGCCTGGAGCCCCTTCGCCAGGCGGCTTTCACTGACGGTGCTGGCCAGGGCAGCAGGGCCGGTTTGGCGACCTGGAGGTGGATATGGGTAGTGGCTGCCCAGCCCAGCCAACCCTGTCCCCTTGGGGCATTCTCTCGAGGCTGCTGGGTGTCCTGGCAGGCACGTCCTGTGGGGTCAGCACGCCGGCTGCAGCGCAGGGTGGGCCTGAGATCGGGTGCCGGGCCCCCCATCTCCACCTGTCTGGACACGCACCCCTGGCCTGTCCTTGCAGCTTCCTCCCGACATCCCTTGGCGGTGTCTGTGTCTCGGCCCCAGCCCCAGCCCTCCTTTCCTGGGGCACCCTCCCAGCCATCTGGTATTGGGGCTGCCCCCATTGCCTAGTCCTGGGCCCAGGGCCAGCCCACTCTGGGCTGGCTTTACTTGTCTGTTCCTAATGGCAGGGCGTCCCAGGAACAGCCCCATAAGAGCTGGTAGAAACAGGAGGGAGTCCTTGTCAGCAGGCATCTTCGAGCTTTTTGTTTTGTTTTGTAAAAAGCGGTTAACCAGCAAGTTACATAAAAGCTTATTTGTTCCCACTGAATTTTCCACACCTCACACGTGAGTCCCAGCCATGCAGTGCTTGTGAGGGAGCATCACCCCTTGCCGCCTGGCTGGGCGGGGCCCTGGGCTCAGAGGGGTCAGCCACAGAGGAAGCGCCTGTCCTGACGTGTAGCGGCCAGGACCTGGGCGCTGGAGAGGGGCCAGCTGGGTGAAGACGGCTCCCGGGGGCACTGGCGCACACGAGGTGGGGTCTCTGTCCAGCCTGGGTAGGCATGAGCTGAGCTCGAGTGAGGGCCCTGCCTGCCCACAGCACGGGGCCCCAGCGCTCTAACCCGGCCATTTGCCCGTGCAGCCTGTTGCGCTGTCCCCACCTGCGGGGCCTGCAGATGGCTGCGTGTGGCTCACTAACCTAAAGCATGTGTTTCTTCCCTCTGCTGTCCACCGCTCTGGTAGGCACTTACCTGGGTAAGTAGTTTTTGTGCTACTGGCCAGCCCTGGGCGCTGGGCCTTGGCTTGTGGCAGGTGCCCTGAGGTATGGCTGTTCCTGCTTGGGAGCGCCGCAGATCAGGCACCTGGGCCCCCACCTGACCCTGCCCGGCAGAGCTAAGCAAACTGGCAGGGAAAGGCTGACCCAGGGCTCCAGGGCCCCAGTTGGCCCCCAGGGGAGTGCCCCAAGTTAGGAGGCAACTGCAGGTGGGGAGGGGCTGGACAGGCTGCTTCTGTTCCTTAAGGGATGGGCCTCAGCTAAGCAGCGTTTCTGGAGCTGGCAGGTTGCTCCGATGCCCCTGGGCCCTGGCACCTGACTGAGTTGAGTATGACATCCTGTCCTCTCTGAGCTGGTCCTGCTGGGAGCCGAGCCATCCTGGGACCAGCTCCCACATGCACACGCCCACACCTACACACAGGGCAGTGGGGAAGGGCAGTGAGTGGGGGAGGGCAGCGGCGGTCCTGGGCCCAGCTGGGGGTGACCAGGAGCATGGACCCCGCTTCTTGGCCCAACTCCCGCAGTGCCCCTTGGGCTCCTCACCCTGCACTGTGGGAAGTCAGAGGCCTCTGGCACCCCATCCCCAAGCACATGCCAGGGTGGCTGGGGCCCAGCCAGGGCAGTGGGTGGTGACCTGTTTCTGGCCGGGGCTGGCGGCTCTCTCAGAGCCTTAGGAAAAAGCCCGGCCTCCTGGTGGGGCAGTGCCGGCCACAGCGTGGCTGCCCTGCAGAGGGGCTTGTGCCGCTGCTGGACTGACAGCCTTGCGAGGCTTTGCTTGTCTCGGCACGGCAGGCAAGTGGGTGGACAGCCCCGGCCCCTGTGCAGGGAGGTGACTGTCGGGTCCAAGGCTCCTGGCCTCCTGCCTGGAGCCCAAGCCAATGTGTCTCTTGCTGGCCAGAGAGCTGTGGGGCCACCAGGCGGCCCAGGACCCGGGGATGCGAGGCCCCACGTCCCCCAGGCCCATCCTGGGTGTGGGCTGTGGCTTGGTTGGCAGATGGCCCCGGCCCATTGTCCCAAGGTGGCTGAGGCCGTGGTGGGCGGTGGGAGTGCAGGACGCGCTCTCTCGGGGCCTCATTTCTCTCCTCCATTTCTCATCAG
Seq C2 exon
GTCTGGCAAACCACGGACAGGCCAGGCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182979-MTA1:NM_004689:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.987
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)