HsaINT0105831 @ hg38
Intron Retention
Gene
ENSG00000182979 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:HGNC:7410]
Coordinates
chr14:105466707-105469498:+
Coord C1 exon
chr14:105466707-105466742
Coord A exon
chr14:105466743-105469466
Coord C2 exon
chr14:105469467-105469498
Length
2724 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
TCTCCTCCATTTCTCATCAGGTC
3' ss Score
10.32
Exon sequences
Seq C1 exon
GCAACATGAAGAAGCGCCTCTTGATGCCCAGTAGGG
Seq A exon
GTAAGGCCTGGAGCCGCGGGCGGGCGCTGCGCCGGCCCCGCCCGTGATGCCTGTGCTGTGCTGCTCTGTGTCCCCGCGGCGGGCGGCCCAGGGCCCATGCTTGGGGCAGTCCACGTGAGCCAGGCCACAGCCCAGTTCCCCACATTCCTCCCGACATCACTGGTCCCTTGGTGAAGACCCCCCGAGCCCAGGCATCTGGCCCTCGGCCCCCTGGCCCCGCCTCCTGTCAGTGGACTGTCCTGGCACGTGTGGCCCTGGCGCCCCTGCCTGCGCTGTCTGCCATCGCGCTGTGACTGCCCGCATGCTGCCAGCCTCAGCTCGTGGGGCCGCCCGTGCTGTGCCTGCAATCCTTCCGTGCGCCTGCCAGGCGGGACAGTGGGGAGGGTGGTCGGGGGTGTCTGTGTGGGCCGTGGGCAACTGAGCTTGTACACATGGGTGCCTTCTGTCGGAGGACTGGCTCAGGTGCTCTGTGCCGGTTGCTTGGAGCAGGGGCTGCGGGACCCCAGGCCCCTTGGGGAAGAGCAGATAGGACCAAGCCTAGCATGAGGAGGCCAGGTGTGTGGGGCCCGGGTGTGCAAGTGCTGGGCCTGCCAGTGTGGATGTGCCTGGAGCCCCTTCGCCAGGCGGCTTTCACTGACGGTGCTGGCCAGGGCAGCAGGGCCGGTTTGGCGACCTGGAGGTGGATATGGGTAGTGGCTGCCCAGCCCAGCCAACCCTGTCCCCTTGGGGCATTCTCTCGAGGCTGCTGGGTGTCCTGGCAGGCACGTCCTGTGGGGTCAGCACGCCGGCTGCAGCGCAGGGTGGGCCTGAGATCGGGTGCCGGGCCCCCCATCTCCACCTGTCTGGACACGCACCCCTGGCCTGTCCTTGCAGCTTCCTCCCGACATCCCTTGGCGGTGTCTGTGTCTCGGCCCCAGCCCCAGCCCTCCTTTCCTGGGGCACCCTCCCAGCCATCTGGTATTGGGGCTGCCCCCATTGCCTAGTCCTGGGCCCAGGGCCAGCCCACTCTGGGCTGGCTTTACTTGTCTGTTCCTAATGGCAGGGCGTCCCAGGAACAGCCCCATAAGAGCTGGTAGAAACAGGAGGGAGTCCTTGTCAGCAGGCATCTTCGAGCTTTTTGTTTTGTTTTGTAAAAAGCGGTTAACCAGCAAGTTACATAAAAGCTTATTTGTTCCCACTGAATTTTCCACACCTCACACGTGAGTCCCAGCCATGCAGTGCTTGTGAGGGAGCATCACCCCTTGCCGCCTGGCTGGGCGGGGCCCTGGGCTCAGAGGGGTCAGCCACAGAGGAAGCGCCTGTCCTGACGTGTAGCGGCCAGGACCTGGGCGCTGGAGAGGGGCCAGCTGGGTGAAGACGGCTCCCGGGGGCACTGGCGCACACGAGGTGGGGTCTCTGTCCAGCCTGGGTAGGCATGAGCTGAGCTCGAGTGAGGGCCCTGCCTGCCCACAGCACGGGGCCCCAGCGCTCTAACCCGGCCATTTGCCCGTGCAGCCTGTTGCGCTGTCCCCACCTGCGGGGCCTGCAGATGGCTGCGTGTGGCTCACTAACCTAAAGCATGTGTTTCTTCCCTCTGCTGTCCACCGCTCTGGTAGGCACTTACCTGGGTAAGTAGTTTTTGTGCTACTGGCCAGCCCTGGGCGCTGGGCCTTGGCTTGTGGCAGGTGCCCTGAGGTATGGCTGTTCCTGCTTGGGAGCGCCGCAGATCAGGCACCTGGGCCCCCACCTGACCCTGCCCGGCAGAGCTAAGCAAACTGGCAGGGAAAGGCTGACCCAGGGCTCCAGGGCCCCAGTTGGCCCCCAGGGGAGTGCCCCAAGTTAGGAGGCAACTGCAGGTGGGGAGGGGCTGGACAGGCTGCTTCTGTTCCTTAAGGGATGGGCCTCAGCTAAGCAGCGTTTCTGGAGCTGGCAGGTTGCTCCGATGCCCCTGGGCCCTGGCACCTGACTGAGTTGAGTATGACATCCTGTCCTCTCTGAGCTGGTCCTGCTGGGAGCCGAGCCATCCTGGGACCAGCTCCCACATGCACACGCCCACACCTACACACAGGGCAGTGGGGAAGGGCAGTGAGTGGGGGAGGGCAGCGGCGGTCCTGGGCCCAGCTGGGGGTGACCAGGAGCATGGACCCCGCTTCTTGGCCCAACTCCCGCAGTGCCCCTTGGGCTCCTCACCCTGCACTGTGGGAAGTCAGAGGCCTCTGGCACCCCATCCCCAAGCACATGCCAGGGTGGCTGGGGCCCAGCCAGGGCAGTGGGTGGTGACCTGTTTCTGGCCGGGGCTGGCGGCTCTCTCAGAGCCTTAGGAAAAAGCCCGGCCTCCTGGTGGGGCAGTGCCGGCCACAGCGTGGCTGCCCTGCAGAGGGGCTTGTGCCGCTGCTGGACTGACAGCCTTGCGAGGCTTTGCTTGTCTCGGCACGGCAGGCAAGTGGGTGGACAGCCCCGGCCCCTGTGCAGGGAGGTGACTGTCGGGTCCAAGGCTCCTGGCCTCCTGCCTGGAGCCCAAGCCAATGTGTCTCTTGCTGGCCAGAGAGCTGTGGGGCCACCAGGCGGCCCAGGACCCGGGGATGCGAGGCCCCACGTCCCCCAGGCCCATCCTGGGTGTGGGCTGTGGCTTGGTTGGCAGATGGCCCCGGCCCATTGTCCCAAGGTGGCTGAGGCCGTGGTGGGCGGTGGGAGTGCAGGACGCGCTCTCTCGGGGCCTCATTTCTCTCCTCCATTTCTCATCAG
Seq C2 exon
GTCTGGCAAACCACGGACAGGCCAGGCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182979:ENST00000331320:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.846 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development