HsaEX0040388 @ hg38
Exon Skipping
Gene
ENSG00000182979 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:HGNC:7410]
Coordinates
chr14:105466426-105469498:+
Coord C1 exon
chr14:105466426-105466578
Coord A exon
chr14:105466707-105466742
Coord C2 exon
chr14:105469467-105469498
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCCCACCCCGGCGCTGCCAGGCA
3' ss Score
3.79
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
AGACCCACCCCCGCCCCCCCAAGCCTGACCCCGTGAAAAGCGTGTCCAGCGTGCTCAGCAGCCTGACGCCCGCCAAGGTGGCCCCCGTCATCAACAACGGCTCCCCCACCATCCTGGGCAAGCGCAGCTACGAGCAGCACAACGGGGTGGACG
Seq A exon
GCAACATGAAGAAGCGCCTCTTGATGCCCAGTAGGG
Seq C2 exon
GTCTGGCAAACCACGGACAGGCCAGGCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182979-'41-61,'41-53,43-61
Average complexity
S
Mappability confidence:
100%=100=90%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.942 A=0.846 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCAGCAGCCTGACG
R:
CTGGCCTGTCCGTGGTTTG
Band lengths:
128-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development