RnoEX0056148 @ rn6
Exon Skipping
Gene
ENSRNOG00000004711 | Mta1
Description
metastasis associated 1 [Source:RGD Symbol;Acc:621018]
Coordinates
chr6:137946189-137948828:+
Coord C1 exon
chr6:137946189-137946341
Coord A exon
chr6:137946545-137946580
Coord C2 exon
chr6:137948797-137948828
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTGTTCCTGGGCACTGCCAGGCA
3' ss Score
3.68
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
AGACTCATCCCCGCCCGCCTAAGCCCGACCCTGTGAAGAGCTCATCCAGTGTGCTCAGCAGTCTGACCCCTGCCAAGTCAGCCCCTGTCATCAACAATGGCTCCCCTACCATCTTGGGCAAGAGGAGCTATGAGCAGCACAATGGGGTAGATG
Seq A exon
GCAACATGAAGAAGCGCCTCTTGATGCCCAGTAGGG
Seq C2 exon
GTCTGGCAAACCATGGACAGACCAGGCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004711-'21-28,'21-26,22-28
Average complexity
S
Mappability confidence:
100%=100=60%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTCAGCCCCTGTCATCAA
R:
CATGTGCCTGGTCTGTCCATG
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]