BtaEX0023074 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047606 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:HGNC:7410]
Coordinates
chr21:71369683-71372896:+
Coord C1 exon
chr21:71369683-71369835
Coord A exon
chr21:71369958-71369993
Coord C2 exon
chr21:71372865-71372896
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTGCCGCCGGGCGCTGCCAGGCA
3' ss Score
3.07
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
AGACCCACCCCCGCCCCCCCAAGCCCGACCCAGTGAAGAGCGTGTCTGGTGTGCTCAGCGGCCTGACCCCTGCCAAGTCGGCCCCTGTCATCAACAACGGCTCCCCTACCATCCTGGGCAAGAGGAGCTACGAGCAGCACAACGGGGTCGACG
Seq A exon
GCAACGTGAAGAAGCGCCTCTTGATGCCCAGTAGGG
Seq C2 exon
GTTTGGCGAACCACGGACAGACCAGGCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047606_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.933 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTCGGCCCCTGTCATCAA
R:
CATGTGCCTGGTCTGTCCG
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development