MmuEX0029874 @ mm10
Exon Skipping
Gene
ENSMUSG00000021144 | Mta1
Description
metastasis associated 1 [Source:MGI Symbol;Acc:MGI:2150037]
Coordinates
chr12:113133185-113135828:+
Coord C1 exon
chr12:113133185-113133337
Coord A exon
chr12:113133541-113133576
Coord C2 exon
chr12:113135797-113135828
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTGTTCCTGGGCACTGCCAGGCA
3' ss Score
3.68
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
AGACCCATCCCCGCCCGCCTAAGCCCGACCCCGTGAAGAGTTCATCCAGTGTGCTCAGCAGTCTGACCCCTGCCAAGTCAGCCCCTGTCATCAACAACGGCTCCCCTACCATCCTGGGCAAGAGGAGCTACGAGCAGCACAATGGGGTAGATG
Seq A exon
GCAACATGAAGAAGCGCCTCTTGATGCCCAGTAGGG
Seq C2 exon
GTCTGGCAAACCATGGACAGACCAGGCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021144-'31-38,'31-34,34-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTCAGCCCCTGTCATCAA
R:
CATGTGCCTGGTCTGTCCATG
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types