MmuEX0029871 @ mm10
Exon Skipping
Gene
ENSMUSG00000021144 | Mta1
Description
metastasis associated 1 [Source:MGI Symbol;Acc:MGI:2150037]
Coordinates
chr12:113133185-113135828:+
Coord C1 exon
chr12:113133185-113133337
Coord A exon
chr12:113134801-113134812
Coord C2 exon
chr12:113135797-113135828
Length
12 bp
Sequences
Splice sites
3' ss Seq
CCGCCTCCTCACTCTGGCAGGCA
3' ss Score
7.93
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
AGACCCATCCCCGCCCGCCTAAGCCCGACCCCGTGAAGAGTTCATCCAGTGTGCTCAGCAGTCTGACCCCTGCCAAGTCAGCCCCTGTCATCAACAACGGCTCCCCTACCATCCTGGGCAAGAGGAGCTACGAGCAGCACAATGGGGTAGATG
Seq A exon
GCACTTACCTGG
Seq C2 exon
GTCTGGCAAACCATGGACAGACCAGGCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021144-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000109723fB2555
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAACAACGGCTCCCCTAC
R:
CATGTGCCTGGTCTGTCCATG
Band lengths:
97-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types