RnoEX0056153 @ rn6
Exon Skipping
Gene
ENSRNOG00000004711 | Mta1
Description
metastasis associated 1 [Source:RGD Symbol;Acc:621018]
Coordinates
chr6:137946189-137948828:+
Coord C1 exon
chr6:137946189-137946341
Coord A exon
chr6:137947749-137947760
Coord C2 exon
chr6:137948797-137948828
Length
12 bp
Sequences
Splice sites
3' ss Seq
CCGCCTCATCCCTCTGGCAGGCA
3' ss Score
8.71
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
AGACTCATCCCCGCCCGCCTAAGCCCGACCCTGTGAAGAGCTCATCCAGTGTGCTCAGCAGTCTGACCCCTGCCAAGTCAGCCCCTGTCATCAACAATGGCTCCCCTACCATCTTGGGCAAGAGGAGCTATGAGCAGCACAATGGGGTAGATG
Seq A exon
GCACTTACCTGG
Seq C2 exon
GTCTGGCAAACCATGGACAGACCAGGCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004711-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000046456fB9055
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACAATGGCTCCCCTACCA
R:
CATGTGCCTGGTCTGTCCATG
Band lengths:
95-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]