HsaEX0040386 @ hg38
Exon Skipping
Gene
ENSG00000182979 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:HGNC:7410]
Coordinates
chr14:105466707-105469498:+
Coord C1 exon
chr14:105466707-105466742
Coord A exon
chr14:105468338-105468349
Coord C2 exon
chr14:105469467-105469498
Length
12 bp
Sequences
Splice sites
3' ss Seq
GCTGTCCACCGCTCTGGTAGGCA
3' ss Score
4.53
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GCAACATGAAGAAGCGCCTCTTGATGCCCAGTAGGG
Seq A exon
GCACTTACCTGG
Seq C2 exon
GTCTGGCAAACCACGGACAGGCCAGGCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182979-MICROEX2
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.846 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development