BtaEX6079211 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016471 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr18:1928085-1932880:-
Coord C1 exon
chr18:1932731-1932880
Coord A exon
chr18:1930392-1930584
Coord C2 exon
chr18:1928085-1928209
Length
193 bp
Sequences
Splice sites
3' ss Seq
GGGTCTGTTGTGTCGCTCAGAGC
3' ss Score
5.19
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CTGTTGTAGATGCCGATGGAAGAATTTATATTCGGAACTGGCAGGGTGGCATCCTATCAGGGGGCTTTGAGAAAAACCCAAAACCAATTTTCACTGAGGGCAAGAACCAGCTGGAGATTCAGAATCTGCAGGAAGACTGGGATCATTTTG
Seq A exon
AGCCCCTGCTGAGTTCCCTGCTGCGTCGGATGCCACAGCTGGAGACGCTGGAGATCGTGAAGTTGGTGAACTGCCCCGAGACCTTCACCCCAGACATGCGGTGCATCATGGGCGAGTCTCCCTCAGTGCGGGGCTACTTCGTCCTGGTGGGAATGAACTCTGCAGGCCTTTCGTTTGGTGGAGGAGCTGGAAA
Seq C2 exon
GTACCTTGCTGAGTGGATGGTGTACGGCTACCCCTCGGAAAACGTCTGGGAACTGGACCTGAAGCGGTTTGGAGCCCTCCAGAGCAGCCGAACCTTCCTGCGCCACCGTGTCATGGAGGTCATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016471-'20-10,'20-9,21-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(13.9=100)
A:
PF0126619=DAO=FE(17.8=100)
C2:
PF0126619=DAO=PD(1.4=11.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATTCGGAACTGGCAGGGTG
R:
ATGACCTCCATGACACGGTGG
Band lengths:
246-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]