GgaEX0003417 @ galGal3
Exon Skipping
Gene
ENSGALG00000002690 | F1NG59_CHICK
Description
NA
Coordinates
chr11:1762817-1766898:-
Coord C1 exon
chr11:1766749-1766898
Coord A exon
chr11:1764420-1764612
Coord C2 exon
chr11:1762817-1762941
Length
193 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGTCTTGGCTCCTAGAAC
3' ss Score
8.57
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CTGTTGTGGACCCCGATGGCAGGATCTACATCCGCAACTGGCAGGGCGGAATCCTCTCGGGGGGCTTTGAGAAAAACCCCAAACCTCTTTTCACGGAGGGACGGAACCAGCTGGAGATCCATAACCTGCAGGAAGACTGGGATCACTTTG
Seq A exon
AACCGCTTCTGAGCTCCCTTCTGCGCAGGATGCCCAACTTGGAGGCTCTGCAGATCATGCAGTTGGTGAATTGCCCGGAGTCCTTCACGCCAGACATGCGGTGCATCATGGGCGAGTCGCCCACCGTGCGGGGATACTTCGTTCTGGCTGGAATGAACTCAGCTGGGATCTCATATGGTGGGGGAGCAGGCAA
Seq C2 exon
GTACCTGGCAGAGTGGATGGTAAATGGCTACCCATCAGAAAACGTCTGGCCTTTGGATTTGAAGCGCTTTGGTACCCTCCAGAGCAGCCGCACCTTCCTCCGTCACCGTGTGATGGAAGTGATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002690-'8-8,'8-7,10-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(13.9=100)
A:
PF0126619=DAO=FE(17.8=100)
C2:
PF0126619=DAO=PD(1.4=11.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCTACATCCGCAACTGGC
R:
GCATCACTTCCATCACACGGT
Band lengths:
254-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]