GgaEX0003417 @ galGal4
Exon Skipping
Gene
ENSGALG00000002690 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr11:1781757-1785838:-
Coord C1 exon
chr11:1785689-1785838
Coord A exon
chr11:1783360-1783552
Coord C2 exon
chr11:1781757-1781881
Length
193 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGTCTTGGCTCCTAGAAC
3' ss Score
8.57
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CTGTTGTGGACCCCGATGGCAGGATCTACATCCGCAACTGGCAGGGCGGAATCCTCTCGGGGGGCTTTGAGAAAAACCCCAAACCTCTTTTCACGGAGGGACGGAACCAGCTGGAGATCCATAACCTGCAGGAAGACTGGGATCACTTTG
Seq A exon
AACCGCTTCTGAGCTCCCTTCTGCGCAGGATGCCCAACTTGGAGGCTCTGCAGATCATGCAGTTGGTGAATTGCCCGGAGTCCTTCACGCCAGACATGCGGTGCATCATGGGCGAGTCGCCCACCGTGCGGGGATACTTCGTTCTGGCTGGAATGAACTCAGCTGGGATCTCATATGGTGGGGGAGCAGGCAA
Seq C2 exon
GTACCTGGCAGAGTGGATGGTAAATGGCTACCCATCAGAAAACGTCTGGCCTTTGGATTTGAAGCGCTTTGGTACCCTCCAGAGCAGCCGCACCTTCCTCCGTCACCGTGTGATGGAAGTGATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002690-'9-9,'9-8,11-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(13.9=100)
A:
PF0126619=DAO=FE(17.8=100)
C2:
PF0126619=DAO=PD(1.4=11.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCTACATCCGCAACTGGC
R:
GCATCACTTCCATCACACGGT
Band lengths:
254-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]