DreEX0006640 @ danRer10
Exon Skipping
Gene
ENSDARG00000103288 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr18:50958195-50958958:+
Coord C1 exon
chr18:50958195-50958344
Coord A exon
chr18:50958567-50958759
Coord C2 exon
chr18:50958834-50958958
Length
193 bp
Sequences
Splice sites
3' ss Seq
CATTGTGTGTGTGTGTGTAGAGC
3' ss Score
7.29
5' ss Seq
GAAGTAAGC
5' ss Score
6.95
Exon sequences
Seq C1 exon
TGGTGATCGACATGGACGGACGGATCTATGCGCGCTCTTGGCATGGGGGAATCCTGTCTGGAGGTTTCGAGAAGAACCCCAAACCCATCTTCACTGAGGGACGCAACCAGCTGGAGGTGCAGAACATGCAGGAGGACTGGGATCACTTCG
Seq A exon
AGCCGATGCTGAGTGCTCTGCTGCGCCGGATGCCGGCTCTGGAGGCCTGTGAGGTGCAGCAGCTGGTCAACTGCCCCGAGTCCTTCACGCCGGACATGCGCTGCCTGATGGGTGAGACTCCGGGTGCCGGCGGGTACTTCGTGCTGGCAGGCATGAACTCGTCCGGCCTGTCGTTCGCCGGCGGAGCGGGGAA
Seq C2 exon
GTTTCTGGCGGAGTGGATGACACACGGGTACCCCAGCGCCAACGTCTGGCCTCTAGACATCAAGCGCTTCGGGAACCTGCAGAGCAGCCGCACCTTCCTGCGGCACCGGGTGATGGAGGTGATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103288-'11-11,'11-10,14-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(13.9=100)
A:
PF0126619=DAO=FE(17.8=100)
C2:
PF0126619=DAO=PD(1.4=11.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCTATGCGCGCTCTTGG
R:
ATCACCTCCATCACCCGGTG
Band lengths:
252-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]