BtaEX6079212 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016471 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr18:1926293-1930584:-
Coord C1 exon
chr18:1930392-1930584
Coord A exon
chr18:1928085-1928209
Coord C2 exon
chr18:1926293-1926448
Length
125 bp
Sequences
Splice sites
3' ss Seq
GGCAACTTCCCCCTTTGCAGGTA
3' ss Score
8.88
5' ss Seq
TGCGTGAGT
5' ss Score
7.55
Exon sequences
Seq C1 exon
AGCCCCTGCTGAGTTCCCTGCTGCGTCGGATGCCACAGCTGGAGACGCTGGAGATCGTGAAGTTGGTGAACTGCCCCGAGACCTTCACCCCAGACATGCGGTGCATCATGGGCGAGTCTCCCTCAGTGCGGGGCTACTTCGTCCTGGTGGGAATGAACTCTGCAGGCCTTTCGTTTGGTGGAGGAGCTGGAAA
Seq A exon
GTACCTTGCTGAGTGGATGGTGTACGGCTACCCCTCGGAAAACGTCTGGGAACTGGACCTGAAGCGGTTTGGAGCCCTCCAGAGCAGCCGAACCTTCCTGCGCCACCGTGTCATGGAGGTCATGC
Seq C2 exon
CTCTGCTCTATGACCTGAAGGTTCCCCGTTGGGACTTCCAGACTGGAAGGCAGTTACGCACCTCTCCTCTCTATGACCGGCTGGACGCGCAGGGAGCCAGGTGGATGGAGAAACATGGATTCGAGAGGCCAAAGTACTTCATACCACCAGACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016471-'21-11,'21-10,22-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(17.8=100)
A:
PF0126619=DAO=PD(1.4=11.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGAAGTTGGTGAACTGCC
R:
GTTTCTCCATCCACCTGGCTC
Band lengths:
253-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]