GgaEX6008921 @ galGal3
Exon Skipping
Gene
ENSGALG00000002690 | F1NG59_CHICK
Description
NA
Coordinates
chr11:1761516-1764612:-
Coord C1 exon
chr11:1764420-1764612
Coord A exon
chr11:1762817-1762941
Coord C2 exon
chr11:1761516-1761671
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTCTGCTTCCATTAGGTA
3' ss Score
9.24
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
AACCGCTTCTGAGCTCCCTTCTGCGCAGGATGCCCAACTTGGAGGCTCTGCAGATCATGCAGTTGGTGAATTGCCCGGAGTCCTTCACGCCAGACATGCGGTGCATCATGGGCGAGTCGCCCACCGTGCGGGGATACTTCGTTCTGGCTGGAATGAACTCAGCTGGGATCTCATATGGTGGGGGAGCAGGCAA
Seq A exon
GTACCTGGCAGAGTGGATGGTAAATGGCTACCCATCAGAAAACGTCTGGCCTTTGGATTTGAAGCGCTTTGGTACCCTCCAGAGCAGCCGCACCTTCCTCCGTCACCGTGTGATGGAAGTGATGC
Seq C2 exon
CTCTCATGTGTGACCTCAAAGTTCCCCGCTGGGACTTCCAGACGGGCAGACAGCTGCGTACCTCCCCGCTGTACGACCGCCTGGATGCCCAGGGGGCCAGGTGGATGGAGAAGCACGGCTTTGAGAGGGTCAAATACTTCGTCCCACCTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002690-'10-9,'10-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(17.8=100)
A:
PF0126619=DAO=PD(1.4=11.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCCTTCACGCCAGACATG
R:
TTTGACCCTCTCAAAGCCGTG
Band lengths:
250-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]