RnoEX0064643 @ rn6
Exon Skipping
Gene
ENSRNOG00000022593 | Pdpr
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:RGD Symbol;Acc:1308307]
Coordinates
chr19:43120530-43127255:-
Coord C1 exon
chr19:43127063-43127255
Coord A exon
chr19:43123897-43124021
Coord C2 exon
chr19:43120530-43120685
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCTCCATCTGAACAGGCT
3' ss Score
8.31
5' ss Seq
TGCGTGAGT
5' ss Score
7.55
Exon sequences
Seq C1 exon
AGCCCCTGTTGAGTTCCCTCCTGCGCAGGATGCCAGGATTGGAGTCTGTGGAGATTTTGAAGTTGGTGAATTGCCCTGAGACCTTCACGGCAGACATGAAGTGCATCATGGGCGAGTCCCCTGTCGTCCAGGGCTACTTTGTCCTGGCAGGGATGAACTCTGCTGGCCTGTCGCTGGGCGGAGGAGCTGGAAA
Seq A exon
GCTCCTAGCTGAATGGATGGTGTATGGTTACCCCTCTGAAAACGTCTGGGAATTGGACTTGCAGCGCTTTGGAGCCCTCCAGGGCAGCCGCACCTTTCTGCGCCACCGGGTCATGGAAGTTATGC
Seq C2 exon
CTCTGATATACGATCTGAAGGTTCCTCGTTGGGATTTCCAGACTGGAAGGCAGTTGCGCACATCTCCTCTTTATGACCGGCTGGATGCTCAAGGAGCCAGATGGATGGAGAAACATGGATTTGAGAGGCCAAAGTACTTTGTTCCACCCAACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022593-'17-18,'17-17,19-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(17.8=100)
A:
PF0126619=DAO=PD(1.4=11.6)
C2:
NO
Main Skipping Isoform:
ENSRNOT00000038452fB10485
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGAATTGCCCTGAGACCT
R:
TTCTCCATCCATCTGGCTCCT
Band lengths:
242-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]