MmuEX0034313 @ mm10
Exon Skipping
Gene
ENSMUSG00000033624 | Pdpr
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:MGI Symbol;Acc:MGI:2442188]
Coordinates
chr8:111117967-111123900:+
Coord C1 exon
chr8:111117967-111118159
Coord A exon
chr8:111121148-111121272
Coord C2 exon
chr8:111123745-111123900
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCTCCATCTAAACAGGTT
3' ss Score
10.07
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
AGCCCCTGCTGAGTTCCCTCCTGCGTAGGATGCCAGCATTGGAGACTCTGGAGATTTTGAAGTTGGTGAATTGCCCTGAGACCTTCACACCAGACATGAAGTGCATCATGGGCGAGTCTCCTGTAGTACAGGGCTACTTTGTCCTGGCAGGGATGAACTCTGCTGGCCTGTCGTTGGGTGGAGGAGCTGGAAA
Seq A exon
GTTCCTAGCAGAATGGATGGTATATGGTTATCCCTCTGAAAATGTCTGGGAGTTGGATTTGCAGCGCTTCGGAGCCCTCCAGAGCAGCCGCACCTTTCTGCGCCACCGGGTCATGGAAGTTATGC
Seq C2 exon
CTCTGATATATGATCTGAAGGTTCCCCGTTGGGATTTCCAGACTGGAAGGCAGTTACGTACATCTCCTCTTTATGACCGGCTGGATGCTCAAGGAGCCAGATGGATGGAGAAACATGGATTTGAGAGGCCAAAGTACTTTGTTCCACCCAACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033624-'15-20,'15-18,17-20=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(17.8=100)
A:
PF0126619=DAO=PD(1.4=11.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGAATTGCCCTGAGACCT
R:
TTCTCCATCCATCTGGCTCCT
Band lengths:
242-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types