BtaEX6079293 @ bosTau6
Exon Skipping
Description
Chymotrypsinogen A Chymotrypsin A chain A Chymotrypsin A chain B Chymotrypsin A chain C [Source:UniProtKB/Swiss-Prot;Acc:P00766]
Coordinates
chr18:2604152-2605298:+
Coord C1 exon
chr18:2604152-2604231
Coord A exon
chr18:2604996-2605099
Coord C2 exon
chr18:2605219-2605298
Length
104 bp
Sequences
Splice sites
3' ss Seq
ACCCCATCCTCCCTCCTCAGGCT
3' ss Score
10.2
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CACCCCACACCTCTCTGAAGGCAGCACCATGAACTTCCTCTGGCTTCTCTCCTACTGCGCCCTCCTGGGCACAGCCTTTG
Seq A exon
GCTGCGGGGTCCCCGCCATCCAACCTGTGCTAAGCGGCCTCTCCAGGATTGTCAACGGGGAAGAAGCTGTCCCCGGCTCCTGGCCCTGGCAGGTGTCCCTGCAG
Seq C2 exon
GACAAGACCGGCTTCCACTTCTGCGGGGGCTCCCTCATCAACGAGAACTGGGTGGTCACCGCCGCCCACTGCGGTGTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011995-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(32.7=51.4)
C2:
PF0008921=Trypsin=FE(11.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCCACACCTCTCTGAAGG
R:
GTGACCACCCAGTTCTCGTTG
Band lengths:
139-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]