HsaEX7107902 @ hg38
Exon Skipping
Gene
ENSG00000168925 | CTRB1
Description
chymotrypsinogen B1 [Source:HGNC Symbol;Acc:HGNC:2521]
Coordinates
chr16:75219000-75223048:+
Coord C1 exon
chr16:75219000-75219059
Coord A exon
chr16:75222768-75222871
Coord C2 exon
chr16:75222969-75223048
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTCACCCCACTCCCCCCCAGGCT
3' ss Score
8.09
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCAGCGGCATGGCTTCCCTCTGGCTCCTCTCCTGCTTCTCCCTTGTGGGGGCCGCCTTTG
Seq A exon
GCTGCGGGGTCCCCGCCATCCACCCTGTGCTCAGCGGCCTGTCCAGGATCGTGAATGGGGAGGACGCCGTCCCCGGCTCCTGGCCCTGGCAGGTGTCCCTGCAG
Seq C2 exon
GACAAAACCGGCTTCCACTTCTGCGGGGGCTCCCTCATCAGCGAGGACTGGGTGGTCACCGCTGCCCACTGCGGGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168925-'22-18,'22-8,32-18=AN
Average complexity
A_C3
Mappability confidence:
100%=100=55%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.006 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(8.1=51.4)
C2:
PF0008921=Trypsin=FE(11.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCATTTCTCCTGCCTCAGC
R:
TTACTGAGGCTCTGTGGGGAG
Band lengths:
250-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains