DreEX6006177 @ danRer10
Exon Skipping
Gene
ENSDARG00000039730 | zgc:112160
Description
zgc:112160 [Source:ZFIN;Acc:ZDB-GENE-050417-229]
Coordinates
chr7:34794287-34794980:-
Coord C1 exon
chr7:34794914-34794980
Coord A exon
chr7:34794487-34794590
Coord C2 exon
chr7:34794287-34794366
Length
104 bp
Sequences
Splice sites
3' ss Seq
CTCTTATGTGTTTTCTTCAGGCT
3' ss Score
10.39
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTCTTCGTGTCTACAATGGCTTTCCTGTGGCTGCTGTCCTGTGTTGCCTTCTTTAGTGCAGCCTATG
Seq A exon
GCTGTGGCGTTCCTGCCATTCCTCCTGTTGTCAGTGGTTATGCCCGCATTGTGAACGGTGAGGAGGCAGTGCCTCACTCCTGGCCCTGGCAGGTGTCTCTGCAG
Seq C2 exon
GACTTCACTGGCTTCCACTTCTGTGGAGGCTCTCTGATCAATGAGTTCTGGGTTGTTACTGCTGCTCACTGCAGTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039730-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(8.0=51.4)
C2:
PF0008921=Trypsin=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTCGTGTCTACAATGGCT
R:
GCAGTGAGCAGCAGTAACAAC
Band lengths:
139-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]