BtaEX6082518 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018240 | CYP2S1
Description
Bos taurus cytochrome P450, family 2, subfamily S, polypeptide 1 (CYP2S1), mRNA. [Source:RefSeq mRNA;Acc:NM_001100366]
Coordinates
chr18:50661238-50665856:+
Coord C1 exon
chr18:50661238-50661379
Coord A exon
chr18:50662847-50663034
Coord C2 exon
chr18:50665715-50665856
Length
188 bp
Sequences
Splice sites
3' ss Seq
TTTCCTCTTCTTGCATGCAGAGC
3' ss Score
9.26
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GAGAAGCAAGACCCAAACACAGAATTCACCGCCAAGAACCTGCTGATGACGGTCGTGTATCTGCTGTTTGCCGGGACAGTGACGGTCAGCACCACGATCCGCTACACCCTGCTGCTCCTGCTGAAATACCCTCAGGTCCAAG
Seq A exon
AGCGTGTGCAGGAGGAGCTGATGCGAGAGCTGGGGGCCGGCCAGAGGCCAAGCCTGGGGGACCGAGCCCGCCTCCCCTACACGGATGCAGTTCTGCATGAGGCGCAGCGGCTGCTGGCGCTGGTACCCATGGGAATACCCCGAGCCCTCACCAAGACCACCCGCTTCCGGGGGTACACCCTGCCACAG
Seq C2 exon
GGCACAGAGGTCTTCCCCCTTCTTGGCTCCATCCTGCATGACCCCGCCGTCTTTGAAGAGCCCAAGGAGTTCAACCCAGGCCGATTCCTGGACGCGGATGGGAAGTTCAAGAAGCACGAGGCGTTCCTGCCCTTCTCCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018240-'6-9,'6-7,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.119 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.8=100)
A:
PF0006717=p450=FE(14.2=100)
C2:
PF0006717=p450=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAACACAGAATTCACCGCC
R:
TTCTTGAACTTCCCATCCGCG
Band lengths:
243-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]