MmuEX6009166 @ mm9
Exon Skipping
Gene
ENSMUSG00000040703 | Cyp2s1
Description
cytochrome P450, family 2, subfamily s, polypeptide 1 [Source:MGI Symbol;Acc:MGI:1921384]
Coordinates
chr7:26588935-26593204:-
Coord C1 exon
chr7:26593063-26593204
Coord A exon
chr7:26590890-26591077
Coord C2 exon
chr7:26588935-26589076
Length
188 bp
Sequences
Splice sites
3' ss Seq
AACCTTCCTCTTGTATTCAGAGC
3' ss Score
7.33
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GAGAAACAAGACCCAGGTACAGAATTCACCGAGAAGAACTTGCTGATGACGGTCACATACCTGCTGTTTGCTGGGACCATGACCATCGGTGCCACCATCCGCTATGCCCTCCTGCTCCTGCTGAGATACCCTCAAGTCCAGC
Seq A exon
AGCGCGTCCGGGAGGAGCTCATACAGGAGCTGGGTCCTGGCAGGGCTCCAAGTCTCAGCGATCGAGTTCGCCTCCCTTACACGGATGCCGTTTTACACGAGGCACAGCGGCTCCTGGCACTGGTACCCATGGGCATGCCCCACACCATCACGAGGACCACTTGCTTCCGAGGGTACACTCTGCCCAAG
Seq C2 exon
GGCACTGAGGTCTTCCCTCTGATTGGCTCCATACTGCATGACCCTGCGGTTTTCCAGAACCCAGGAGAGTTCCATCCAGGCCGCTTCCTGGACGAAGATGGTCGGTTGAGAAAACACGAAGCCTTCCTGCCCTACTCCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040703-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.032 C2=0.039
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.2=100)
A:
PF0006717=p450=FE(13.5=100)
C2:
PF0006717=p450=FE(10.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTGCTGATGACGGTCACA
R:
TAAGGAGTAGGGCAGGAAGGC
Band lengths:
247-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: