RnoEX6001766 @ rn6
Exon Skipping
Gene
ENSRNOG00000020743 | Cyp2s1
Description
cytochrome P450, family 2, subfamily s, polypeptide 1 [Source:RGD Symbol;Acc:1306078]
Coordinates
chr1:82596633-82601758:-
Coord C1 exon
chr1:82601617-82601758
Coord A exon
chr1:82598792-82598979
Coord C2 exon
chr1:82596633-82596774
Length
188 bp
Sequences
Splice sites
3' ss Seq
CCGTAACACTCTTGATTCAGAGC
3' ss Score
4.86
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GAGAAAGAAGACCCAGGTACAGAATTCACCGAGAAGAACTTGCTGATGACAGTCACATACCTGCTGTTTGCTGGGACTATGACCATCGGAGCCACCATCCGCTATGCCCTTCTGCTCCTACTGAAGTACCCTCAAGTCCAAA
Seq A exon
AGCGTGTTCGGGAGGAGCTGATCCAGGAGCTGGGTCCCAGCAGGACTCCAAGTCTCAGCGATCGAGTTCGCCTCCCTTACACGGATGCTGTTTTACACGAGGCACAGCGGCTCCTGGCCCTGGTACCCATGGGAATGCCCCACACCGTCACGAAGACCACTTCCTTCAGAGGATATACTCTGCCCAAG
Seq C2 exon
GGCACTGAGGTCTTTCCTCTGATTGGCTCCGTACTGCACGACCCTGCGGTTTTCCGGAACCCGGAAGAGTTCCATCCAAGCCGCTTCCTGGACGACGACGGTCGGATTAGAAAACACGAAGCCTTCCTGCCCTACTCCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020743-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.127 C2=0.021
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.2=100)
A:
PF0006717=p450=FE(13.5=100)
C2:
PF0006717=p450=FE(10.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCGAGAAGAACTTGCTGA
R:
TAAGGAGTAGGGCAGGAAGGC
Band lengths:
258-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]