BtaEX6083214 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012606 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:HGNC:25294]
Coordinates
chr18:54937460-54938361:-
Coord C1 exon
chr18:54938258-54938361
Coord A exon
chr18:54938037-54938112
Coord C2 exon
chr18:54937460-54937548
Length
76 bp
Sequences
Splice sites
3' ss Seq
TCCCGTGCCCCCTGTTCCAGGTT
3' ss Score
10.42
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TAACGGAGCTCTGCAATGTGGCCTGCTCCAGCGTGATGCCCGGCGGGGGCACCAACCTGGAGCTGGCACTGCACTGCCTGCATGAAGCCCAGGGCGACATCCAG
Seq A exon
GTTGCCCTGGAGACCCTCTTACTCAGAGGACCCCAGAAGCCGCGAACTCACCCTCTTGCCAGCTACCGCTACACAG
Seq C2 exon
GTTCAGACATCTGGACCCCCATGGAGAAGAGGCTCTTTAAGAAGGCATTCTGTGCCCACAAGAAGGACTTTAACTTGATACACAAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012606-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.077 C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PD(19.0=31.4)
A:
NO
C2:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACGGAGCTCTGCAATGTGG
R:
AGTCCTTCTTGTGGGCACAGA
Band lengths:
173-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]