GgaEX6047188 @ galGal3
Exon Skipping
Gene
ENSGALG00000022619 | ZNF541
Description
NA
Coordinates
chrUn_random:730341-730919:-
Coord C1 exon
chrUn_random:730884-730919
Coord A exon
chrUn_random:730552-730627
Coord C2 exon
chrUn_random:730341-730429
Length
76 bp
Sequences
Splice sites
3' ss Seq
CCCTTCTCCTCCGCCTGCAGGAC
3' ss Score
12.17
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
CTCCAATGCCTGCACGAAGCACGGGGCAACGTGGTG
Seq A exon
GACGCTCTGGAGCTGCTGCTGTTCGGATGGCCGCACAAATCCCAGTCCCATCCTCTCGCTAATTACCGCTACACAG
Seq C2 exon
GCTCGGATGTGTGGACGCCCGTGGAGAGGCAGCTCTTCAGAAACGCCTTTCATGCCCACAAGAAGGATTTCTACCTGATCCAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022619-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAATGCCTGCACGAAGC
R:
TCTGGATCAGGTAGAAATCCTTCT
Band lengths:
120-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]