RnoEX6001403 @ rn6
Exon Skipping
Gene
ENSRNOG00000021800 | Zfp541
Description
zinc finger protein 541 [Source:RGD Symbol;Acc:1310756]
Coordinates
chr1:77986544-77988632:+
Coord C1 exon
chr1:77986544-77986647
Coord A exon
chr1:77988025-77988100
Coord C2 exon
chr1:77988544-77988632
Length
76 bp
Sequences
Splice sites
3' ss Seq
CACACCTCCTGTCCTTCCAGGTT
3' ss Score
11.32
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
TGATGGAACTCTGCAATGTAGCATGCTCCAGTGTGATGCCAGGAGGGGGCACCAACCTGGAGCTTGCCCTGCACTGCCTGCATGACGCCCAGGGCAGTGTTCAG
Seq A exon
GTTGCCCTGGAGACTCTGTTACTCAGAGGACCCCAGAAGCCCCGGACTCACCCGCTGGCTGACTATCGCTATACAG
Seq C2 exon
GGTCAGACATCTGGACCCCCATGGAGAAGAGGCTCTTCAAGAAGGCATTCTGTGCCCACAAGAAGGACTTTTACCTGATACATAAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021800-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PD(19.0=31.4)
A:
NO
C2:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGCAATGTAGCATGCTCC
R:
AAGTCCTTCTTGTGGGCACAG
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]