DreEX0029734 @ danRer10
Exon Skipping
Gene
ENSDARG00000011445 | elmsan1a
Description
ELM2 and Myb/SANT-like domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-041001-151]
Coordinates
chr20:25991146-25992686:-
Coord C1 exon
chr20:25992583-25992686
Coord A exon
chr20:25991860-25991935
Coord C2 exon
chr20:25991146-25991234
Length
76 bp
Sequences
Splice sites
3' ss Seq
ATTATTTTTTAATTCTGTAGGAA
3' ss Score
8.43
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
TTGATAATCTGATGAACCTGGTCTGTTCCAGTGTAATGTATGGGGGAGGGACAAACACAGAGCTCGCAATGCACTGCCTGCATGAGTGCAAAGGTGATGTCATG
Seq A exon
GAAGCTTTGGAAATGATGATGCTGAAAAATCCCATCTTCTCCTGGAACCACCAACTAGCCAATTACCATTATGCAG
Seq C2 exon
GATCAGACTATTGGAGTGCAGATGAAAAACGATACTTCAACAAGGGAATTTCTGCTTATACAAAAGATTTCTTCATGGTGCAAAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011445-'10-10,'10-8,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PD(20.4=31.4)
A:
NO
C2:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGAACCTGGTCTGTTCCA
R:
TGCACCATGAAGAAATCTTTTGT
Band lengths:
178-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]