MmuEX6082040 @ mm9
Exon Skipping
Gene
ENSMUSG00000042507 | C130039O16Rik
Description
RIKEN cDNA C130039O16 gene [Source:MGI Symbol;Acc:MGI:2685106]
Coordinates
chr12:85499205-85500703:-
Coord C1 exon
chr12:85500600-85500703
Coord A exon
chr12:85499926-85500001
Coord C2 exon
chr12:85499205-85499293
Length
76 bp
Sequences
Splice sites
3' ss Seq
TGCCCTTTCTTCCCCTCCAGGAG
3' ss Score
13.13
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TGGATGACCTGCTGACAGCTGCCTGTTCAAGCATTTTCCCTGGGGCCGGCACCAACCAGGAGCTGGCCCTGCACTATCTGCATGAGTCCCGGGGGGACATCCTG
Seq A exon
GAGGCGCTGAATAAGCTGCTACTGAGGAAGCCCCTGCGGCCTCACAATCACCCACTGGCGACATATCACTACACAG
Seq C2 exon
GCTCTGACCAGTGGAAGACGGCTGAGAGGAAGCTGTTCAACAAGGGCATTGCCATCTATAAGAAAGATTTCTTCCTGGTGCAGAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042507-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PD(19.0=31.4)
A:
NO
C2:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAGCATTTTCCCTGGGGC
R:
CAGCTTCTGCACCAGGAAGAA
Band lengths:
168-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: