BtaEX6054965 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009272 | ELMSAN1
Description
ELM2 and Myb/SANT-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19853]
Coordinates
chr10:85524186-85525584:-
Coord C1 exon
chr10:85525481-85525584
Coord A exon
chr10:85524950-85525025
Coord C2 exon
chr10:85524186-85524274
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTTCCTCACTTCCCTTTCAGGAA
3' ss Score
13.47
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TGGAAGACCTGCTGACAGCTGCCTGCTCCAGCATTTTCCCTGGAGCCGGCACCAACCAGGAGCTGGCCCTGCACTGTCTGCACGAGTCCAGGGGAGACATCCTG
Seq A exon
GAAACGCTGAATAAGCTGCTACTGAAGAAGCCCCTGCGTCCCCATAACCACCCGCTGGCAACTTATCACTACACAG
Seq C2 exon
GCTCCGACCAGTGGAAGATGGCTGAGAGGAAGCTATTCAACAAGGGCATTGCCATCTACAAGAAGGACTTCTTTCTGGTGCAGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009272-'14-7,'14-6,15-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PD(19.0=31.4)
A:
NO
C2:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGACCTGCTGACAGCT
R:
GTCCTTCTTGTAGATGGCAATGC
Band lengths:
172-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]