GgaEX0013631 @ galGal3
Exon Skipping
Gene
ENSGALG00000009282 | C14orf43
Description
NA
Coordinates
chr5:28314185-28316506:+
Coord C1 exon
chr5:28314185-28314294
Coord A exon
chr5:28315142-28315217
Coord C2 exon
chr5:28316418-28316506
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGTTGTTTATTTTAGGGG
3' ss Score
11.57
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
Exon sequences
Seq C1 exon
GAATAGTGGAAAGCCTGCTAGCTGCTGCCTGCTCAAGCATTTTTCCTGGGGGTGGAACCAACCAGGAGCTGGCACTGCATTTCTTACATGAAGAAAAGGGAAGCGTTCTG
Seq A exon
GGGGCTCTGTCCAAGCTGCTATTGAAGGGGCCAGTACGATCATCTACCCATCCTCTGGCAGATTATCACTACACAG
Seq C2 exon
GATCAGACAGTTGGAAAGTTGCTGAAAAGAAGCTTTTCAACAAAGGCATTGCAATCTACAAGAAGGACTTTTTCTTGGTCCAAAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009282-'7-9,'7-8,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PD(21.7=35.1)
A:
NO
C2:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTGGAAAGCCTGCTAGCTG
R:
TCCTTCTTGTAGATTGCAATGCCT
Band lengths:
174-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]