RnoEX0031747 @ rn6
Exon Skipping
Gene
ENSRNOG00000010653 | Elmsan1
Description
ELM2 and Myb/SANT domain containing 1 [Source:RGD Symbol;Acc:1306119]
Coordinates
chr6:107642087-107643632:-
Coord C1 exon
chr6:107643529-107643632
Coord A exon
chr6:107642820-107642895
Coord C2 exon
chr6:107642087-107642175
Length
76 bp
Sequences
Splice sites
3' ss Seq
TGCCCTTTCTTTCCCTCCAGGAG
3' ss Score
13.73
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
TGGATGACCTGCTGACGGCCGCCTGTTCAAGTATTTTCCCTGGTGCCGGCACCAACCAGGAACTGGCCCTACACTATCTGCATGAGTCCCGGGGGGACATCCTG
Seq A exon
GAGGCGCTGAATAAGCTGCTACTGAAGAAGCCCCTGCGGCCCCACAATCACCCACTGGCTACCTATCACTACACAG
Seq C2 exon
GCTCTGACGAGTGGAAGATGGCTGAGAGGAAGCTGTTCAACAAGGGCATTGCCATCTATAAGAAAGATTTCTTCCTGGTGCAGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010653-'17-16,'17-13,18-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PD(19.0=31.4)
A:
NO
C2:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCGCCTGTTCAAGTATTT
R:
CAGTTTCTGCACCAGGAAGAA
Band lengths:
178-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]