MmuEX6008499 @ mm9
Exon Skipping
Gene
ENSMUSG00000078796 | Zfp541
Description
zinc finger protein 541 [Source:MGI Symbol;Acc:MGI:3647699]
Coordinates
chr7:16676157-16678276:+
Coord C1 exon
chr7:16676157-16676260
Coord A exon
chr7:16677635-16677710
Coord C2 exon
chr7:16678188-16678276
Length
76 bp
Sequences
Splice sites
3' ss Seq
CACATCTCCTGTCCTTCCAGGTT
3' ss Score
10.93
5' ss Seq
CAGGTGACA
5' ss Score
5.49
Exon sequences
Seq C1 exon
TGATGGAGCTCTGCAATGTAGCATGCTCCAGTGTGATGCCAGGAGGGGGCACCAACCTGGAGCTTGCCCTGCACTGCCTGCATGATGCCCAGGGCAGTGTTCAG
Seq A exon
GTTGCCCTGGAGACTCTGTTACTCAGAGGACCCCAGAAGCCCCGGACTCACCCACTGGCTGACTATCGATACACAG
Seq C2 exon
GTTCAGACATCTGGACCCCCATGGAGAAGAGGCTCTTCAAGAAGGCATTCTGTGCCCACAAGAAGGACTTTTACCTGATACACAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078796-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.077 C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PD(19.0=31.4)
A:
NO
C2:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTGCAATGTAGCATGCT
R:
AGTCCTTCTTGTGGGCACAGA
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: