BtaEX6083215 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012606 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:HGNC:25294]
Coordinates
chr18:54935813-54938112:-
Coord C1 exon
chr18:54938037-54938112
Coord A exon
chr18:54937460-54937548
Coord C2 exon
chr18:54935813-54935953
Length
89 bp
Sequences
Splice sites
3' ss Seq
CCCCGGCTATTTCTTGCTAGGTT
3' ss Score
8.82
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
Exon sequences
Seq C1 exon
GTTGCCCTGGAGACCCTCTTACTCAGAGGACCCCAGAAGCCGCGAACTCACCCTCTTGCCAGCTACCGCTACACAG
Seq A exon
GTTCAGACATCTGGACCCCCATGGAGAAGAGGCTCTTTAAGAAGGCATTCTGTGCCCACAAGAAGGACTTTAACTTGATACACAAGACG
Seq C2 exon
ATCCAGACAAAGACCGTAGCCCAGTGTGTCGAGTATTATTACATCTGGAAAAAAATGATCAAGTTTGACTGTGGCCGAGCCCCAGGGCCAGAAAAGAGGGTCAGGAGGGAGCCAGATGAAGTAGACAGGGCGGAAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012606-'13-16,'13-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.447
Domain overlap (PFAM):
C1:
NO
A:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
C2:
PF0024926=Myb_DNA-binding=PD(34.8=34.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCAGAGGACCCCAGAAGC
R:
CTTCATCTGGCTCCCTCCTGA
Band lengths:
178-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]