RnoEX6001402 @ rn6
Exon Skipping
Gene
ENSRNOG00000021800 | Zfp541
Description
zinc finger protein 541 [Source:RGD Symbol;Acc:1310756]
Coordinates
chr1:77988025-77990906:+
Coord C1 exon
chr1:77988025-77988100
Coord A exon
chr1:77988544-77988632
Coord C2 exon
chr1:77990766-77990906
Length
89 bp
Sequences
Splice sites
3' ss Seq
ACCTACCCTGTCCCCGGCAGGGT
3' ss Score
8.64
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTTGCCCTGGAGACTCTGTTACTCAGAGGACCCCAGAAGCCCCGGACTCACCCGCTGGCTGACTATCGCTATACAG
Seq A exon
GGTCAGACATCTGGACCCCCATGGAGAAGAGGCTCTTCAAGAAGGCATTCTGTGCCCACAAGAAGGACTTTTACCTGATACATAAGACG
Seq C2 exon
ATCCAGACTAAAAGTGTAGCACAGTGTGTTGAGTACTACTACATCTGGAAAAAAATGGTTAAGTTTGACTGTGGCCGAGCTCCTGGGCTGGAGAAGAGGGGCAGAAGAGAGCTGGATGAGGTAGAAAGGACTGAAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021800-'14-17,'14-14,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.000 C2=0.298
Domain overlap (PFAM):
C1:
NO
A:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
C2:
PF0024926=Myb_DNA-binding=PD(34.8=34.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCAGAGGACCCCAGAAGC
R:
GCTCTCTTCTGCCCCTCTTCT
Band lengths:
169-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]