GgaEX6047189 @ galGal3
Exon Skipping
Gene
ENSGALG00000022619 | ZNF541
Description
NA
Coordinates
chrUn_random:730085-730627:-
Coord C1 exon
chrUn_random:730552-730627
Coord A exon
chrUn_random:730341-730429
Coord C2 exon
chrUn_random:730085-730225
Length
89 bp
Sequences
Splice sites
3' ss Seq
GAGTGCTGCTTCATCCCCAGGCT
3' ss Score
6.48
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
GACGCTCTGGAGCTGCTGCTGTTCGGATGGCCGCACAAATCCCAGTCCCATCCTCTCGCTAATTACCGCTACACAG
Seq A exon
GCTCGGATGTGTGGACGCCCGTGGAGAGGCAGCTCTTCAGAAACGCCTTTCATGCCCACAAGAAGGATTTCTACCTGATCCAGAAGAAG
Seq C2 exon
GTCCAGACGAAGAACGTGTCCCAGTGCGTCGAGTACTACTACATCTGGAAAAAGATCATCAAGTTCGACCACAGCCGAGCTCAGAACGCGGACAAAAAGGCCAAGAGGGACAGCAGTGAGGCAGAGGAGGCCGAGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022619-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.277
Domain overlap (PFAM):
C1:
NO
A:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
C2:
PF0024926=Myb_DNA-binding=PD(34.8=34.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCCAGTCCCATCCTCTCG
R:
CTCCTCTGCCTCACTGCTGTC
Band lengths:
168-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]