MmuEX6008498 @ mm9
Exon Skipping
Gene
ENSMUSG00000078796 | Zfp541
Description
zinc finger protein 541 [Source:MGI Symbol;Acc:MGI:3647699]
Coordinates
chr7:16677635-16680631:+
Coord C1 exon
chr7:16677635-16677710
Coord A exon
chr7:16678188-16678276
Coord C2 exon
chr7:16680491-16680631
Length
89 bp
Sequences
Splice sites
3' ss Seq
CCCTGGCTGCTCCCCGGCAGGTT
3' ss Score
8.69
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GTTGCCCTGGAGACTCTGTTACTCAGAGGACCCCAGAAGCCCCGGACTCACCCACTGGCTGACTATCGATACACAG
Seq A exon
GTTCAGACATCTGGACCCCCATGGAGAAGAGGCTCTTCAAGAAGGCATTCTGTGCCCACAAGAAGGACTTTTACCTGATACACAAGATG
Seq C2 exon
ATCCAGACTAAAAGTGTAGCACAGTGTGTCGAGTACTACTACATCTGGAAAAAGATGGTTAAGTTTGATTGTGGCCGAGCTCCTGGGCTGGAGAAGAGGGGCAGAAGAGAGCTGGATGAAGTAGAAAGGACTGAAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078796-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.298
Domain overlap (PFAM):
C1:
NO
A:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
C2:
PF0024926=Myb_DNA-binding=PD(34.8=34.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCAGAGGACCCCAGAAGC
R:
GCTCTCTTCTGCCCCTCTTCT
Band lengths:
169-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: