BtaEX6084503 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MUV6]
Coordinates
chr18:65900426-65902938:+
Coord C1 exon
chr18:65900426-65900552
Coord A exon
chr18:65900837-65900953
Coord C2 exon
chr18:65901545-65902938
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCGCCCGTCTTCTCCTGCAGGCC
3' ss Score
11.53
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GGCCTAATGGCCTTTGAGGATGTGGCCGTGCACTTCTCCCAGGAGGAGTGGGGGCTCCTGGATACAGCGCAGAGGGCTCTGTACCGCCGGGTGATGCTGGAGAACTTTGCCCTCCTGGCCTCGCTGG
Seq A exon
GCCTGTCTGTGTCCCGGCCCCGTGTGGTCACGCAGCTGGAGTGCGGCAACGAGCCCTGGGTTCTCAGTGGGGCGGACGTGACCTTGGCCTGGGATGCCCAGAGGAGGCCCCACCACG
Seq C2 exon
GCTCCCCTCCTCTGGTGGAGGACGGTTGTGTTTCTGGAGAAGCCCCATTCCCAGGGGCCTTCGGGGATGGCTCCCCTCTGGCGCCTGCCAGGGTCCTCCCCACCGCGGGTGCCTGTGAGCGCGGGAAGATCCCGGAGGGTCGGCGCAGCATCTCCCCTTCCCGGGAGAGGAGACCCACCGGGGTGTCCGTGATCTACTGGGAGAGGCTCCGGCTGGGGCCGGGCAGGGGCGACGCCAGCGTGAGCCTCCGGCTGACCTCTTCTCTGCGGCCGCCACCTGGGGACAAGGCCCTCGCAGAGCACCCCACGCCCAGCCAGCCACCCCGGGTGTCAGAGCGGCGGAAGCCCTGGGCACGCGAGGCCCCCGGGGGAGCCTTCTCGAGTGCTCCCGGGGCTCCAGGAGCGCGAGGGATGGGCCCGGCCTGGCGCGAGCCTCCCGGCTGGGCCGAGCTGAGTGAGGCACTGCAGCCCGGGCCTGGCCTCCTCTCTGGGGAGAAGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039453-'4-4,'4-2,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.225 C2=0.425
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGCTGGAGAACTTTGCCC
R:
AGCCTCTCCCAGTAGATCACG
Band lengths:
244-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]