MmuEX6008405 @ mm10
Exon Skipping
Gene
ENSMUSG00000004500 | Zfp324
Description
zinc finger protein 324 [Source:MGI Symbol;Acc:MGI:2444641]
Coordinates
chr7:12968795-12973822:+
Coord C1 exon
chr7:12968795-12968968
Coord A exon
chr7:12969364-12969480
Coord C2 exon
chr7:12970214-12973822
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGCTCCTTATTCCTTCCTAGGAC
3' ss Score
9.72
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
AGATGGATGGCCTTTGAGGACGTGGCTGTGTACTTCTCCCAGGAGGAGTGGATGTTCCTGAATGCCGCCCAGAGGGCCTTGTACCGCCATGTAATGCTGGAAAACTTCGCACTTGTAGACTCCATAGGTAAAGGCCTGAGTTGAGTCCTTCATTGGAAGCAAAGCTGGGACCAG
Seq A exon
GACCTTCTGTCTCCCGGCCTCGTGTGATCATCCAACTCCAGCGTGGTGAGGAACCCTGGGTTCCCAACAGGACAAATAGAGGCCCAGGCAGGGGTGCCCACAGGAGATCCAGCCTTG
Seq C2 exon
GATCCAATTATAGTACAAGAGAAAGACATGTGTCTAGAACACCTCCAGGGGCCACCTGTGACAGGCCTGATAGGATACCTACTAGTATCCTTCCTCCTGCTGGTGCCTACCCTGATGCAAAAATTCTGGAGGGACACCAAAGTGCCTGCCCATCTCTACAGAAAAAACCCACAGGGGTATCAGTGATTTACTGGGAGCAACTCCTGCTAGGTTCCAGCAGCAGTGAAGCAACTGTCAGCTTGCGATTGACTTCTCCAGTAGGGGTTCCTGAAAATGGTTCATCTAGAGGGAAGGCCTTCTCTGACTTTCTGGCCCCAGGGAAGCAGCCACGGGTAGCAGAGCAGCGAAAGCCAGAGATGCAGCTAACCCCTGGGAGAACTTTCCAAAGCATTCCAGATCTCCATGGGGCAGAGGAGGGACGTGGGATGAGTGAGGCTTGGCATGAGTCTCAGGGAGACCCCAATGTTACAGAGGCCCGGATATGGGATGAGCTGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004500-'1-5,'1-2,8-5=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.708 C2=0.407
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.5),PF127602=Zn_Tnp_IS1595=WD(100=11.2),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAGGAGTGGATGTTCCT
R:
TTTTGCATCAGGGTAGGCACC
Band lengths:
258-375
Functional annotations
There are 1 annotated functions for this event
PMID: [2]
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: inferred by curator. ELM ID: ELMI002972; ELM sequence: PWVP; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types