BtaEX6084919 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13174035-13175834:-
Coord C1 exon
chr19:13175702-13175834
Coord A exon
chr19:13174703-13174772
Coord C2 exon
chr19:13174035-13174137
Length
70 bp
Sequences
Splice sites
3' ss Seq
ACAGAAGCTGTGGTCCGCAGGGA
3' ss Score
3
5' ss Seq
TGGGTAATC
5' ss Score
4.2
Exon sequences
Seq C1 exon
ACATGGACATCCCGCTGCCTGATGAAGTTCTACGCCGTGGTGGCCGCCTCACCCATGTCCTGGGAAAGCCACAAGGTTGCCGAGAGGATCGAACAGCGCATCTTGAACTCCAACCCCGTCATGGAAGCTTTCG
Seq A exon
GGAACGCGTGCACGCTGAGGAACAGCAACAGCAGCCGCTTCGGGAAGTTCATCCAGCTCCAGCTGAATGG
Seq C2 exon
GGCCCAGCAGATGACGGGAGCTGCAGTTCAGACCTACCTCCTGGAGAAAACTCGAGTGGCCTGCCAGGCCCCCAGCGAGAGGAACTTCCACATATTCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.5=100)
A:
PF0006316=Myosin_head=FE(3.9=100)
C2:
PF0006316=Myosin_head=FE(5.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGTTCTACGCCGTGGTG
R:
GCCACTCGAGTTTTCTCCAGG
Band lengths:
172-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]